Macronutrient Metabolism

PNPLA3 Patatin-Like Phospholipase Domain-Containing 3

PNPLA3 encodes a lipase enzyme that breaks down triglycerides stored in liver cells. Certain variants impair this process, increasing susceptibility to non-alcoholic fatty liver disease (NAFLD), particularly with high-calorie or high-fructose diets.

Chromosome
22
Variants read
1
Foods
1
Fig. 1Position of PNPLA3 on chromosome 22 approximate, banding stylised
PNPLA3 · rs738409
0 Mb · p armcentromereq arm · 51 Mb
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Gene function

Regulates triglyceride metabolism and lipid droplet remodeling in hepatocytes (liver cells) and adipose tissue.

Analyzed variants (SNPs)

How to read this: each row is one possible genotype, the two DNA letters you carry at this position, one inherited from each parent. "Normal" matches the more common version; "Carrier" (heterozygous) means you have one copy of each version, usually a partial effect; "Variant" (homozygous) means both copies carry the less common version, usually the strongest effect. The estimated frequency below is calculated from the variant's frequency in the general population (Hardy-Weinberg principle) — it is a population estimate, not a measurement of our own customers.

rs738409 I148M Population frequency: 23.0% Chr. 22 : 44,324,727

The I148M variant (rs738409) is the most studied PNPLA3 polymorphism linked to liver fat accumulation.

Genotype Impact Est. frequency What it means
CCNormal Low impact ~59% Normal PNPLA3 enzyme activity. Standard baseline risk of liver fat accumulation from diet alone.
CGCarrier Moderate ~35% One copy of the risk allele (CG). Moderately reduced enzyme activity; diet quality has a noticeably higher impact on liver fat accumulation.
GGVariant High impact ~5% Two copies of the risk allele (GG). Substantially reduced triglyceride breakdown in the liver, meaningfully raising NAFLD risk, especially with high-calorie, high-fat, or high-fructose diets. Fermented vegetables such as kimchi have been associated with reduced risk in carriers of this genotype.

Estimated with the Hardy-Weinberg principle from the variant's population frequency, not measured directly.

Foods & nutrition for PNPLA3

Beneficial foods

Related reading

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